Publications/

Please find below an abridged version of my list of publication (please note that only the 3 first co-authors are displayed).

You can download a detailed PDF version from here.

In Preparation/

• Insights into the genomic substrate of a curious sparrow.
  

  Pacheco

  , Fawthrop, de Vries et al. To be submitted to the Journal of Evolutionary Biology.

• Global genomic data shed light on the origin and spread of feral pigeons.

  Pacheco

  , Vieira, Martin et al.

Submitted/

• The Vertebrate Genomes Project Phase I: A global reference genome resource.
  Formenti, Absolon, Abueg et al. Amidst the revision process at Nature.

• The birth of the Brazilian Society for Evolutionary Biology — Making amends with History at long last.
  

  Pacheco

  , Torquato, Caron et al. Amidst the revision process at Evolution as a commentary article.

Peer-reviewed/

2025/

• Ancient dog introgression into the Iberian wolf genome may have facilitated adaptation to human-dominated landscapes.
  
  Lobo, Morales, van Oosterhout et al. Genome Research.
  DOI ~ PDF

2024/

• Understanding human-commensalism through an ecological and evolutionary framework.

  Fawthrop, Cerca,

  Pacheco

  et al. Trends in Ecology & Evolution.
  DOI ~ PDF

• Genome-wide population structure in a marine keystone species, the European flat oyster (Ostrea edulis).
  

  Monteiro, Bekkevold,

  Pacheco

  et al. Molecular Ecology.
  DOI ~ PDF ~ CODE

2023/

• Redefining the evolutionary history of the rock dove, Columba livia, using whole genome sequences.
  

  Hernández-Alonso, Ramos-Madrigal, van Grouw et al. Molecular Biology and Evolution.
  DOI ~ PDF

• Uncovering neutral and adaptive genomic differentiation among European perch with brackish water and freshwater origin in the western Baltic Sea region.
  

  Skovrind,

  Pacheco

  , Christensen et al. Fisheries Research.
  DOI ~ PDF ~ CODE

2022/

• Additive and non-additive epigenetic signatures of natural hybridisation between fish species with different mating systems.
  

  Berbel-Filho,

  Pacheco

  , Lira et al. Epigenetics.
  DOI ~ PDF

• Phylogenomics reveals extensive introgression and a case of mito-nuclear discordance in the killifish genus Kryptolebias.
  

  Berbel-Filho,

  Pacheco

  , Tatarenkov et al. Molecular Phylogenetics and Evolution.
  DOI ~ PDF ~ CODE

2021/

• Conservation genomics of the endangered Seychelles magpie robin (Copsychus sechellarum): A unique insight into the history of a precious endemic bird.
  Cavill, Gopalakrishnan, Puetz et al. IBIS.

  DOI ~ PDF

• Against the odds: Hybrid zones between mangrove killifish species with different mating systems.
  

  Berbel-Filho, Tatarenkov,

  Pacheco

  et al. Genes.

  DOI ~ PDF ~ CODE

• The germline mutational process in Rhesus macaque and its implications for phylogenetic dating.
  Bergeron, Besenbacher, Bakker et al. GigaScience.

  DOI ~ PDF

2020/

• Why endogenous TRPV6 currents are not detectable - What can we learn from bats?
  Wolske, Fecher-Trost, Wesely et al. Cell Calcium.

  DOI ~ PDF

• Dense sampling of bird diversity increases power of comparative genomics.
  Feng & Stiller & Deng & Armstrong, Fang, Reeve et al. Nature.

  DOI ~ PDF

• Phylogeny of neotropical Seirinae (Collembola, Entomobryidae) based on mitochondrial genomes.
  

  Godeiro,

  Pacheco

  , Liu et al. Zoological Scripta.

  DOI ~ PDF

• Darwin’s fancy revised: An updated understanding of the genomic constitution of pigeon breeds.
  

  Pacheco

  , van Grouw, Shapiro et al. Genome Biology and Evolution.
  DOI ~ PDF ~ CODE

• Evolutionary history, genomic adaptation to toxic diet, and extinction of the Carolina parakeet.
  Gelabert, Sandoval-Velasco, Serres et al. Current Biology.

  DOI ~ PDF

2019/

• The discovery of neotropical Lepidosira (Collembola, Entomobryidae) and its systematic position.
  

  Nunes, Godeiro,

  Pacheco

  et al. Zoological Scripta.

  DOI ~ PDF

• High-coverage genomes to elucidate the evolution of penguins.
  Pan & Cole, Bi, Fang et al. GigaScience.

  DOI ~ PDF

• Killer whale genomes reveal a complex history of recurrent admixture and vicariance.
  Foote, Martin, Louis et al. Molecular Ecology.

  DOI ~ PDF

2018/

• Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat.
  Mendoza & Xiong, Escalera-Zamudio, Runge et al. Nature Ecology & Evolution.
  DOI ~ PDF

2016/

• Genomic population structure of freshwater‐resident and anadromous ide (Leuciscus idus) in north‐western Europe.
  Skovrind, Olsen, Vieira et al. Ecology and Evolution.
  DOI ~ PDF

2014/

• Padrões citogenéticos de duas espécies de ciclídeos de bacias do semi-árido do Brasil: Crenicichla menezesi e Cichlasoma orientale.
  
  Molina,

  Pacheco

  , Berbel-Filho. Biota Amazônia.

  DOI ~ PDF