Publications/

Hello. Could we get RAxML-NG installed as a module, please? https://github.com/amkozlov/raxml-ng/releases

Telefon: 22 34 21 00 E-post: post.oslo@politiet.no

Please find below an abridged version of my list of publication (please note that only the 3 first co-authors are displayed).

You can download a detailed PDF version from here.

In Preparation/

• On the Origin and Spread of Feral Pigeons.
  

  Pacheco

  , Vieira, Martin et al.

Submitted/

• Genomic Differentiation Among European Perch Perca fluviatilis in the Western Baltic Sea Reflects Colonisation History and Local Adaptation.
  

  Skovrind,

  Pacheco

  , Christensen et al. Submitted to Fisheries Research.

• Dog Introgression Drives Wolf Adaptation to Human-dominated Landscapes.
  

  Lobo, Silva, Morales et al. Under revision by Molecular Biology and Evolution.

Peer-reviewed/

2022/

• Additive and Non-additive Epigenetic Signatures of Natural Hybridisation Between Fish Species with Different Mating Systems.
  

  Berbel-Filho,

  Pacheco

  , Lira et al. Epigenetics.
  DOI ~ PDF

• Phylogenomics Reveals Extensive Introgression and a Case of Mito-nuclear Discordance in the Killifish Genus Kryptolebias.
  

  Berbel-Filho,

  Pacheco

  , Tatarenkov et al. Molecular Phylogenetics and Evolution.
  DOI ~ PDF ~ CODE

2021/

• Conservation Genomics of the Endangered Seychelles Magpie Robin (Copsychus sechellarum): A Unique Insight into the History of a Precious Endemic Bird.
  Cavill, Gopalakrishnan, Puetz et al. IBIS.

  DOI ~ PDF

• Against the Odds: Hybrid Zones Between Mangrove Killifish Species with Different Mating Systems.
  

  Berbel-Filho, Tatarenkov,

  Pacheco

  et al. Genes.

  DOI ~ PDF ~ CODE

• The Germline Mutational Process in Rhesus Macaque and Its Implications for Phylogenetic Dating.
  Bergeron, Besenbacher, Bakker et al. GigaScience.

  DOI ~ PDF

2020/

• Why Endogenous TRPV6 Currents Are Not Detectable - What Can We Learn From Bats?
  Wolske, Fecher-Trost, Wesely et al. Cell Calcium.

  DOI ~ PDF

• Dense Sampling of Bird Diversity Increases Power of Comparative Genomics.
  Feng & Stiller & Deng & Armstrong, Fang, Reeve et al. Nature.

  DOI ~ PDF

• Phylogeny of Neotropical Seirinae (Collembola, Entomobryidae) Based on Mitochondrial Genomes.
  

  Godeiro,

  Pacheco

  , Liu et al. Zoological Scripta.

  DOI ~ PDF

• Darwin’s Fancy Revised: An Updated Understanding of the Genomic Constitution of Pigeon Breeds.
  

  Pacheco

  , van Grouw, Shapiro et al. Genome Biology and Evolution.
  DOI ~ PDF ~ CODE

• Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet.
  Gelabert, Sandoval-Velasco, Serres et al. Current Biology.

  DOI ~ PDF

2019/

• The Discovery of Neotropical Lepidosira (Collembola, Entomobryidae) and Its Systematic Position.
  

  Nunes, Godeiro,

  Pacheco

  et al. Zoological Scripta.

  DOI ~ PDF

• High-coverage Genomes To Elucidate The Evolution of Penguins.
  Pan & Cole, Bi, Fang et al. GigaScience.

  DOI ~ PDF

• Killer Whale Genomes Reveal a Complex History of Recurrent Admixture and Vicariance.
  Foote, Martin, Louis et al. Molecular Ecology.

  DOI ~ PDF

2018/

• Hologenomic Adaptations Underlying the Evolution of Sanguivory in the Common Vampire Bat.
  Mendoza & Xiong, Escalera-Zamudio, Runge et al. Nature Ecology & Evolution.
  DOI ~ PDF

2016/

• Genomic Population Structure of Freshwater‐resident and Anadromous Ide (Leuciscus idus) in North‐western Europe.
  Skovrind, Olsen, Vieira et al. Ecology and Evolution.
  DOI ~ PDF

2014/

• Padrões Citogenéticos de duas Espécies de Ciclídeos de Bacias do Semi-Árido do Brasil: Crenicichla menezesi e Cichlasoma orientale.
  
  Molina,

  Pacheco

  , Berbel-Filho. Biota Amazônia.

  DOI ~ PDF